Package: robustlmm 3.3-1

robustlmm: Robust Linear Mixed Effects Models

Implements the Robust Scoring Equations estimator to fit linear mixed effects models robustly. Robustness is achieved by modification of the scoring equations combined with the Design Adaptive Scale approach.

Authors:Manuel Koller

robustlmm_3.3-1.tar.gz
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robustlmm.pdf |robustlmm.html
robustlmm/json (API)

# Install 'robustlmm' in R:
install.packages('robustlmm', repos = c('https://kollerma.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kollerma/robustlmm/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

8.92 score 28 stars 121 scripts 3.0k downloads 21 mentions 64 exports 15 dependencies

Last updated 12 months agofrom:d4a3283f6f. Checks:OK: 7 WARNING: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 04 2024
R-4.5-win-x86_64NOTENov 04 2024
R-4.5-linux-x86_64WARNINGNov 04 2024
R-4.4-win-x86_64OKNov 04 2024
R-4.4-mac-x86_64OKNov 04 2024
R-4.4-mac-aarch64OKNov 04 2024
R-4.3-win-x86_64OKNov 04 2024
R-4.3-mac-x86_64OKNov 04 2024
R-4.3-mac-aarch64OKNov 04 2024

Exports:asymptoticEfficiencyasymptoticVariancebindDatasetschgDefaultscomparecPsicreateDatasetsFromListcreateRhoFunctionextractPredefinedTuningParameterextractTuningParameterfindTuningParameterfitDatasets_heavyLmefitDatasets_lmerfitDatasets_lmer_bobyqafitDatasets_lmer_Nelder_MeadfitDatasets_lqmmfitDatasets_rlmefitDatasets_rlmerfitDatasets_rlmer_DAStaufitDatasets_rlmer_DAStau_k_0_5fitDatasets_rlmer_DAStau_k_0_5_noAdjfitDatasets_rlmer_DAStau_k_2fitDatasets_rlmer_DAStau_k_2_noAdjfitDatasets_rlmer_DAStau_k_5fitDatasets_rlmer_DAStau_k_5_noAdjfitDatasets_rlmer_DAStau_lmerNoFitfitDatasets_rlmer_DAStau_noAdjfitDatasets_rlmer_DASvarfitDatasets_varComprobfitDatasets_varComprob_compositeSfitDatasets_varComprob_compositeS_2SGSfitDatasets_varComprob_compositeS_OGKfitDatasets_varComprob_compositeTaufitDatasets_varComprob_compositeTau_2SGSfitDatasets_varComprob_compositeTau_OGKfitDatasets_varComprob_SfitDatasets_varComprob_S_2SGSfitDatasets_varComprob_S_OGKgenerateAnovaDatasetsgenerateMixedEffectDatasetsgenerateSensitivityCurveDatasetsgetInfogetMEhuberPsiRcpplapplyDatasetslmerNoFitloadAndMergePartialResultsmergeProcessedFitspartialMoment_standardNormalplotplot.rlmerModprepareMixedEffectDatasetprocessDatasetsInParallelprocessFileprocessFitpsi2propIIrlmersaveDatasetsshortenLabelsKS2022showsmoothPsisplitDatasetsthetaviewCopyOfSimulationStudy

Dependencies:bootDEoptimRfastGHQuadlatticelme4MASSMatrixminqanlmenloptrRcppRcppEigenrlangrobustbasextable

Replication Code For Simulation Studies

Rendered fromsimulationStudies.Rnwusingutils::Sweaveon Nov 04 2024.

Last update: 2023-03-24
Started: 2022-08-05

robustlmm: An R Package for Robust Estimation of Linear Mixed-Effects Models

Rendered fromrlmer.Rnwusingutils::Sweaveon Nov 04 2024.

Last update: 2022-08-05
Started: 2012-12-18

Readme and manuals

Help Manual

Help pageTopics
Robust linear mixed effects modelsrobustlmm-package robustlmm
Compute Asymptotic EfficienciesasymptoticEfficiency asymptoticVariance findTuningParameter
Bind Generated DatasetsbindDatasets
Change default argumentschgDefaults chgDefaults,psi_func_rcpp-method
Create comparison charts for multiple fitscompare getInfo getInfo.lmerMod getInfo.rlmerMod print.xtable.comparison.table xtable.comparison.table
Create Dataset List From List of Data ObjectscreateDatasetsFromList
Create Rho-Functions With Custom Tuning ParametercreateRhoFunction
Extract Tuning Parameters Used In FittingextractPredefinedTuningParameter extractTuningParameter
Fitting FunctionsfitDatasets fitDatasets_heavyLme fitDatasets_lmer fitDatasets_lmer_bobyqa fitDatasets_lmer_Nelder_Mead fitDatasets_lqmm fitDatasets_rlme fitDatasets_rlmer fitDatasets_rlmer_DAStau fitDatasets_rlmer_DAStau_k_0_5 fitDatasets_rlmer_DAStau_k_0_5_noAdj fitDatasets_rlmer_DAStau_k_2 fitDatasets_rlmer_DAStau_k_2_noAdj fitDatasets_rlmer_DAStau_k_5 fitDatasets_rlmer_DAStau_k_5_noAdj fitDatasets_rlmer_DAStau_lmerNoFit fitDatasets_rlmer_DAStau_noAdj fitDatasets_rlmer_DASvar fitDatasets_varComprob fitDatasets_varComprob_compositeS fitDatasets_varComprob_compositeS_2SGS fitDatasets_varComprob_compositeS_OGK fitDatasets_varComprob_compositeTau fitDatasets_varComprob_compositeTau_2SGS fitDatasets_varComprob_compositeTau_OGK fitDatasets_varComprob_S fitDatasets_varComprob_S_2SGS fitDatasets_varComprob_S_OGK
Generate ANOVA type datasetsgenerateAnovaDatasets
Generate Mixed Effects DatasetsgenerateMixedEffectDatasets
Generate Datasets To Create Sensitivity CurvesgenerateSensitivityCurveDatasets
Extract or Get Generalize Components from a Fitted Mixed Effects ModelgetME getME.rlmerMod theta
Lapply for generated datasetslapplyDatasets
Load And Merge Partial ResultsloadAndMergePartialResults
Merge Processed FitsmergeProcessedFits
Other methodsshow show,Rcpp_HuberPsi-method show,Rcpp_PsiFunction-method show,Rcpp_PsiFunctionToPropIIPsiFunctionWrapper-method show,Rcpp_SmoothPsi-method
Compute Partial MomentspartialMoment_standardNormal
Plot an Object of the "Psi Function" Classplot,Rcpp_HuberPsi-method plot,Rcpp_PsiFunction-method plot,Rcpp_PsiFunctionToPropIIPsiFunctionWrapper-method plot,Rcpp_SmoothPsi-method plot-methods
Plot Method for "rlmerMod" objects.plot.rlmerMod print.rlmerMod_plots
Prepare Dataset for Parametric BootstrapprepareMixedEffectDataset
Process Datasets in ParallelprocessDatasetsInParallel
Process File of Stored DatasetsprocessFile
Process Fitted ObjectsprocessFit processFit.heavyLme processFit.lmerMod processFit.lqmm processFit.rlme processFit.rlmerMod processFit.varComprob
Classical, Huber and smoothed Huber psi- or rho-functionscPsi huberPsiRcpp psi-functions PsiFunction SmoothPsi smoothPsi
Convert to Proposal 2 weight functionpsi2propII psi2propII,psi_func_rcpp-method psi2propII,Rcpp_SmoothPsi
Get residualsresiduals.rlmerMod
Robust Scoring Equations Estimator for Linear Mixed ModelslmerNoFit rlmer
rlmerMod Classcoef.rlmerMod deviance.rlmerMod extractAIC.rlmerMod family.rlmerMod fitted.rlmerMod fixef.rlmerMod formula.rlmerMod isGLMM.rlmerMod isLMM.rlmerMod isNLMM.rlmerMod isREML.rlmerMod logLik.rlmerMod model.frame.rlmerMod model.matrix.rlmerMod nobs.rlmerMod predict.rlmerMod print.rlmerMod print.summary.rlmer print.VarCorr.rlmerMod ranef.rlmerMod resid.rlmerMod rlmerMod-class show,rlmerMod-method show.rlmerMod show.summary.rlmerMod sigma.rlmerMod summary.rlmerMod summary.summary.rlmerMod terms.rlmerMod update.rlmerMod VarCorr.rlmerMod VarCorr.summary.rlmerMod vcov.rlmerMod vcov.summary.rlmerMod weights.rlmerMod
Save datasetssaveDatasets
Shorten LabelsshortenLabelsKS2022
Split Datasets Into ChunkssplitDatasets
Access Simulation Study CodeviewCopyOfSimulationStudy